error when doing make

From: <guidomunoz_at_on.br>
Date: Tue, 11 Aug 2015 12:53:00 -0300

Hello guys,

I had a problem when I tried to compile Gadget 2 on a cluster. My
Makefile is the following :

***************************************************************
#--------------------------------------- Basic operation mode of code
OPT += -DPERIODIC
#OPT += -DUNEQUALSOFTENINGS


#--------------------------------------- Things that are always recommended
OPT += -DPEANOHILBERT
OPT += -DWALLCLOCK


#--------------------------------------- TreePM Options
OPT += -DPMGRID=128
#OPT += -DPLACEHIGHRESREGION=3
#OPT += -DENLARGEREGION=1.2
#OPT += -DASMTH=1.25
#OPT += -DRCUT=4.5


#--------------------------------------- Single/Double Precision
OPT += -DDOUBLEPRECISION
OPT += -DDOUBLEPRECISION_FFTW


#--------------------------------------- Time integration options
OPT += -DSYNCHRONIZATION
#OPT += -DFLEXSTEPS
#OPT += -DPSEUDOSYMMETRIC
#OPT += -DNOSTOP_WHEN_BELOW_MINTIMESTEP
#OPT += -DNOPMSTEPADJUSTMENT


#--------------------------------------- Output
#OPT += -DHAVE_HDF5
#OPT += -DOUTPUTPOTENTIAL
#OPT += -DOUTPUTACCELERATION
#OPT += -DOUTPUTCHANGEOFENTROPY
#OPT += -DOUTPUTTIMESTEP


#--------------------------------------- Things for special behaviour
#OPT += -DNOGRAVITY
#OPT += -DNOTREERND
#OPT += -DNOTYPEPREFIX_FFTW
#OPT += -DLONG_X=60
#OPT += -DLONG_Y=5
#OPT += -DLONG_Z=0.2
#OPT += -DTWODIMS
#OPT += -DSPH_BND_PARTICLES
#OPT += -DNOVISCOSITYLIMITER
#OPT += -DCOMPUTE_POTENTIAL_ENERGY
#OPT += -DLONGIDS
#OPT += -DISOTHERM_EQS
#OPT += -DADAPTIVE_GRAVSOFT_FORGAS
#OPT += -DSELECTIVE_NO_GRAVITY=2+4+8+16

#--------------------------------------- Testing and Debugging options
#OPT += -DFORCETEST=0.1


#--------------------------------------- Glass making
#OPT += -DMAKEGLASS=262144


#----------------------------------------------------------------------
# Here, select compile environment for the target machine. This may need
# adjustment, depending on your local system. Follow the examples to add
# additional target platforms, and to get things properly compiled.
#----------------------------------------------------------------------

#--------------------------------------- Select some defaults

CC = mpicc # sets the C-compiler
OPTIMIZE = -O2 -Wall -g # sets optimization and warning flags
MPICHLIB = -lmpich


#--------------------------------------- Select target computer

SYSTYPE="ON"
#SYSTYPE="Mako"
#SYSTYPE="Regatta"
#SYSTYPE="RZG_LinuxCluster"
#SYSTYPE="RZG_LinuxCluster-gcc"
#SYSTYPE="OpteronMPA"
#SYSTYPE="OPA-Cluster32"
#SYSTYPE="OPA-Cluster64"


#--------------------------------------- Adjust settings for target computer

ifeq ($(SYSTYPE),"ON")
CC = mpicc
OPTIMIZE = -O3 -Wall
GSL_INCL = -I/mnt/share/data35/gmunoz/libraries/include
GSL_LIBS = -L/mnt/share/data35/gmunoz/libraries/lib
FFTW_INCL= -I/mnt/share/data35/gmunoz/libraries/include
FFTW_LIBS= -L/mnt/share/data35/gmunoz/libraries/lib
MPICHLIB = -L/mnt/share/data35/gmunoz/libraries/lib
HDF5INCL =
HDF5LIB =
endif
*********************************************************************

The error I got is:

mpicc main.o run.o predict.o begrun.o endrun.o global.o
timestep.o init.o restart.o io.o accel.o read_ic.o ngb.o system.o
  allocate.o density.o gravtree.o hydra.o driftfac.o domain.o
allvars.o potential.o forcetree.o peano.o gravtree_forcetest.o
pm_periodic.o pm_nonperiodic.o longrange.o -g
-L/mnt/share/data35/gmunoz/libraries/lib
-L/mnt/share/data35/gmunoz/libraries/lib -lgsl -lgslcblas -lm
-L/mnt/share/data35/gmunoz/libraries/lib -ldrfftw_mpi -ldfftw_mpi
-ldrfftw -ldfftw -o Gadget2
/mnt/share/data35/gmunoz/libraries/lib/libdfftw_mpi.a(transpose_mpi.o): In
function `transpose_start_exchange_step':
transpose_mpi.c:(.text+0x3f9): undefined reference to `ompi_request_null'
transpose_mpi.c:(.text+0x401): undefined reference to `ompi_request_null'
/mnt/share/data35/gmunoz/libraries/lib/libdfftw_mpi.a(transpose_mpi.o): In
function `transpose_mpi_create_plan':
transpose_mpi.c:(.text+0x1005): undefined reference to `ompi_mpi_double'
/mnt/share/data35/gmunoz/libraries/lib/libdfftw_mpi.a(transpose_mpi.o): In
function `transpose_mpi':
transpose_mpi.c:(.text+0x16f0): undefined reference to `ompi_request_null'
transpose_mpi.c:(.text+0x16f8): undefined reference to `ompi_request_null'
/mnt/share/data35/gmunoz/libraries/lib/libdfftw_mpi.a(fftwnd_mpi.o):
In function `fftw_mpi_die':
fftwnd_mpi.c:(.text+0x2d5): undefined reference to `ompi_mpi_comm_world'
fftwnd_mpi.c:(.text+0x307): undefined reference to `ompi_mpi_comm_world'
collect2: ld returned 1 exit status
make: *** [Gadget2] Error 1


Could you help, please?

Thank you in advance.

Guido Granda Muņoz
Received on 2015-08-11 17:53:03

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