Re: Error when doing make

From: Dimitry Ayzenberg <dayzenbe_at_andrew.cmu.edu>
Date: Wed, 9 Sep 2009 21:40:54 -0400

I figured out the problem, I think. I used version 3 of fftw which
apparently doesn't work. Retrying with version 2 and using the extra
configuration options that are shown in the guide.

Dimitry


On Wed, September 9, 2009 21:35, Dimitry Ayzenberg wrote:
>

> No I'm pretty sure those are properly set, especially since make got past
> the part where it checks if all the headers are available.
>
> Dimitry
>
>
>
> On Wed, September 9, 2009 20:58, SangHoon Oh wrote:
>
>> Hi,
>>
>>
>>
>> Perhaps you didn't include the FFTW headers properly.
>> Please check the CFLAGS whether -I/PATH/TO/FFTW/HEADERS
>> is set to correct the path.
>>
>> Good luck,
>>
>>
>>
>> SangHoon
>>
>>
>>
>>
>> On Thu, Sep 10, 2009 at 8:09 AM, Dimitry
>> Ayzenberg<dayzenbe_at_andrew.cmu.edu> wrote:
>>
>>
>>>
>>> Okay so that worked after I switched to version 1.6.9 and that error
>>> didn't come up again. But now this comes up: (sorry that I pasted all
>>> of it but I figure that would help whoever helps me figure it out
>>> easier)
>>>
>>>
>>>
>>> dimitry_at_Phoenix:~/Desktop/Gadget-2.0.4/Gadget2$ sudo make
>>> mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o main.o main.c
>>> mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o run.o run.c
>>> run.c: In function ‘run’:
>>> run.c:102: warning: ignoring return value of ‘system’, declared
>>> with attribute warn_unused_result mpicc    -O3 -Wall -DPERIODIC
>>>  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o predict.o
>>> predict.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o begrun.o
>>> begrun.c begrun.c: In function ‘read_parameter_file’: begrun.c:602:
>>> warning: ignoring return value of ‘fgets’, declared
>>> with attribute warn_unused_result begrun.c:653: warning: ignoring
>>> return value of ‘system’, declared with attribute
>>> warn_unused_result mpicc    -O3 -Wall -DPERIODIC
>>>  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o endrun.o
>>> endrun.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o global.o
>>> global.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o timestep.o
>>> timestep.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o init.o init.c
>>> mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o restart.o
>>> restart.c restart.c: In function ‘restart’: restart.c:78: warning:
>>> ignoring return value of ‘system’, declared with attribute
>>> warn_unused_result mpicc    -O3 -Wall -DPERIODIC
>>>  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o io.o io.c
>>> io.c: In function ‘write_file’:
>>> io.c:687: warning: ‘rank’ may be used uninitialized in this
>>> function mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o accel.o
>>> accel.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o read_ic.o
>>> read_ic.c read_ic.c: In function ‘find_files’: read_ic.c:649:
>>> warning: ignoring return value of ‘fread’, declared
>>> with attribute warn_unused_result read_ic.c:650: warning: ignoring
>>> return value of ‘fread’, declared with attribute
>>> warn_unused_result read_ic.c:651: warning: ignoring return value of
>>> ‘fread’, declared with attribute warn_unused_result read_ic.c:652:
>>> warning: ignoring return
>>> value of ‘fread’, declared with attribute warn_unused_result
>>> read_ic.c:655: warning: ignoring return value of ‘fread’,
>>> declared with attribute warn_unused_result read_ic.c:656: warning:
>>> ignoring return value of ‘fread’, declared with attribute
>>> warn_unused_result read_ic.c:657: warning: ignoring return value of
>>> ‘fread’, declared with attribute warn_unused_result read_ic.c:681:
>>> warning: ignoring return
>>> value of ‘fread’, declared with attribute warn_unused_result
>>> read_ic.c:682: warning: ignoring return value of ‘fread’,
>>> declared with attribute warn_unused_result read_ic.c:683: warning:
>>> ignoring return value of ‘fread’, declared with attribute
>>> warn_unused_result read_ic.c:684: warning: ignoring return value of
>>> ‘fread’, declared with attribute warn_unused_result read_ic.c:687:
>>> warning: ignoring return
>>> value of ‘fread’, declared with attribute warn_unused_result
>>> read_ic.c:688: warning: ignoring return value of ‘fread’,
>>> declared with attribute warn_unused_result read_ic.c:689: warning:
>>> ignoring return value of ‘fread’, declared with attribute
>>> warn_unused_result read_ic.c: In function ‘read_file’:
>>> read_ic.c:260: warning: ‘hdf5_file’ may be used uninitialized in
>>> this function read_ic.c:261: warning: ‘hdf5_datatype’ may be used
>>> uninitialized in this function mpicc    -O3 -Wall -DPERIODIC
>>>  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o ngb.o ngb.c
>>> mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o system.o
>>> system.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o allocate.o
>>> allocate.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o density.o
>>> density.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o gravtree.o
>>> gravtree.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o hydra.o
>>> hydra.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o driftfac.o
>>> driftfac.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o domain.o
>>> domain.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o allvars.o
>>> allvars.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o potential.o
>>> potential.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o forcetree.o
>>> forcetree.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o peano.o
>>> peano.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>> -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o
>>> gravtree_forcetest.o gravtree_forcetest.c mpicc    -O3 -Wall
>>> -DPERIODIC
>>>  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>> -I/usr/local/include -I/usr/local/include
>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o pm_periodic.o
>>> pm_periodic.c pm_periodic.c:21:28: error: srfftw_mpi.h: No such file
>>> or directory pm_periodic.c:34: error: expected ‘=’, ‘,’,
>>> ‘;’, ‘asm’ or ‘__attribute__’ before
>>> ‘fft_forward_plan’ pm_periodic.c:45: error: expected ‘=’,
>>> ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’
>>> token pm_periodic.c:46: error: expected ‘=’, ‘,’, ‘;’,
>>> ‘asm’ or ‘__attribute__’ before ‘*’ token pm_periodic.c:
>>> In function ‘pm_init_periodic’:
>>> pm_periodic.c:65: error: ‘fft_forward_plan’ undeclared (first use
>>> in this function) pm_periodic.c:65: error: (Each undeclared identifier
>>> is reported only once pm_periodic.c:65: error: for each function it
>>> appears in.) pm_periodic.c:65: warning: implicit declaration of
>>> function ‘rfftw3d_mpi_create_plan’ pm_periodic.c:66: error:
>>> ‘FFTW_REAL_TO_COMPLEX’ undeclared (first use in this function)
>>> pm_periodic.c:66: error: ‘FFTW_ESTIMATE’ undeclared (first use in
>>> this function) pm_periodic.c:66: error: ‘FFTW_IN_PLACE’
>>> undeclared (first use in this
>>> function) pm_periodic.c:67: error: ‘fft_inverse_plan’ undeclared
>>> (first use in this
>>> function) pm_periodic.c:68: error: ‘FFTW_COMPLEX_TO_REAL’
>>> undeclared (first use in
>>> this function) pm_periodic.c:72: warning: implicit declaration of
>>> function ‘rfftwnd_mpi_local_sizes’ pm_periodic.c: In function
>>> ‘pm_init_periodic_allocate’:
>>> pm_periodic.c:124: error: ‘rhogrid’ undeclared (first use in this
>>> function) pm_periodic.c:124: error: ‘fftw_real’ undeclared (first
>>> use in this function) pm_periodic.c:124: error: expected expression
>>> before ‘)’ token pm_periodic.c:132: error: ‘forcegrid’
>>> undeclared (first use in this function) pm_periodic.c:132: error:
>>> expected expression before ‘)’ token pm_periodic.c:139: error:
>>> ‘workspace’ undeclared (first use in this function)
>>> pm_periodic.c:139: error: expected expression before ‘)’ token
>>> pm_periodic.c:153: error: ‘fft_of_rhogrid’ undeclared (first use
>>> in this function) pm_periodic.c:153: error: ‘fftw_complex’
>>> undeclared (first use in this
>>> function) pm_periodic.c:153: error: expected expression before ‘)’
>>> token pm_periodic.c: In function ‘pm_init_periodic_free’:
>>> pm_periodic.c:163: error: ‘workspace’ undeclared (first use in
>>> this function) pm_periodic.c:164: error: ‘forcegrid’ undeclared
>>> (first
>>> use in this function) pm_periodic.c:165: error: ‘rhogrid’
>>> undeclared (first use in this function)
>>> pm_periodic.c: In function ‘pmforce_periodic’:
>>> pm_periodic.c:246: error: ‘workspace’ undeclared (first use in
>>> this function) pm_periodic.c:284: error: ‘rhogrid’ undeclared
>>> (first use
>>> in this function) pm_periodic.c:330: error: ‘fftw_real’ undeclared
>>> (first use in this function)
>>> pm_periodic.c:331: error: ‘forcegrid’ undeclared (first use in
>>> this function) pm_periodic.c:375: warning: implicit declaration of
>>> function ‘rfftwnd_mpi’ pm_periodic.c:375: error:
>>> ‘fft_forward_plan’ undeclared (first use in this function)
>>> pm_periodic.c:375: error:
>>> ‘FFTW_TRANSPOSED_ORDER’ undeclared (first use in this function)
>>> pm_periodic.c:426: error: ‘fft_of_rhogrid’ undeclared (first use
>>> in this function) pm_periodic.c:436: error: ‘fft_inverse_plan’
>>> undeclared (first use in this function) pm_periodic.c: In function
>>> ‘pmpotential_periodic’:
>>> pm_periodic.c:755: error: ‘workspace’ undeclared (first use in
>>> this function) pm_periodic.c:793: error: ‘rhogrid’ undeclared
>>> (first use
>>> in this function) pm_periodic.c:839: error: ‘fftw_real’ undeclared
>>> (first use in this function)
>>> pm_periodic.c:840: error: ‘forcegrid’ undeclared (first use in
>>> this function) pm_periodic.c:886: error: ‘fft_forward_plan’
>>> undeclared (first use in this
>>> function) pm_periodic.c:886: error: ‘FFTW_TRANSPOSED_ORDER’
>>> undeclared (first use in this function) pm_periodic.c:934: error:
>>> ‘fft_of_rhogrid’ undeclared (first use in this function)
>>> pm_periodic.c:944: error: ‘fft_inverse_plan’ undeclared (first
>>> use in this function) make: *** [pm_periodic.o] Error 1
>>>
>>>
>>>
>>> Thanks,
>>> Dimitry
>>>
>>>
>>>
>>>
>>>
>>> On Wed, September 9, 2009 18:00, Jay Billings wrote:
>>>
>>>
>>>> Ah, this error is much more subtle than the others. :) I believe
>>>> this one is caused by using the wrong version of the HDF5 library.
>>>> You are
>>>> probably  using version 1.8.2 and need something like version
>>>> 1.6.2.
>>>>
>>>>
>>>>
>>>> There were some updates to the HDF5 API when they did version 1.8.
>>>>
>>>>
>>>>
>>>>
>>>> Jay
>>>>
>>>>
>>>>
>>>>
>>>> On Wed, Sep 9, 2009 at 5:20 PM, Dimitry Ayzenberg
>>>> <dayzenbe_at_andrew.cmu.edu>wrote:
>>>>
>>>>
>>>>
>>>>
>>>>>
>>>>> So I think I have all the libraries and whatever else I need
>>>>> properly installed and linked. But when I run make I get an odd
>>>>> error that I have  no idea how to fix. This is the full display
>>>>> when I do "make":
>>>>>
>>>>> dimitry_at_Phoenix:~/Desktop/Gadget-2.0.4/Gadget2$ sudo make
>>>>> mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>>> -DPEANOHILBERT
>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>> -I/usr/local/include -I/usr/local/include
>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o main.o
>>>>> main.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>>> -DPEANOHILBERT
>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>> -I/usr/local/include -I/usr/local/include
>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o run.o
>>>>> run.c run.c: In function ‘run’:
>>>>> run.c:102: warning: ignoring return value of ‘system’,
>>>>> declared with attribute warn_unused_result mpicc    -O3 -Wall
>>>>> -DPERIODIC
>>>>> -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>> -I/usr/local/include -I/usr/local/include
>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o predict.o
>>>>> predict.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>>> -DPEANOHILBERT
>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>> -I/usr/local/include -I/usr/local/include
>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o begrun.o
>>>>> begrun.c begrun.c: In function ‘read_parameter_file’:
>>>>> begrun.c:602: warning: ignoring return value of ‘fgets’,
>>>>> declared with attribute warn_unused_result begrun.c:653: warning:
>>>>> ignoring return value of ‘system’, declared with attribute
>>>>> warn_unused_result mpicc    -O3 -Wall -DPERIODIC
>>>>>  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>> -I/usr/local/include -I/usr/local/include
>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o endrun.o
>>>>> endrun.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>>> -DPEANOHILBERT
>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>> -I/usr/local/include -I/usr/local/include
>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o global.o
>>>>> global.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>>> -DPEANOHILBERT
>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>> -I/usr/local/include -I/usr/local/include
>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o
>>>>> timestep.o timestep.c mpicc    -O3 -Wall -DPERIODIC
>>>>>  -DUNEQUALSOFTENINGS
>>>>> -DPEANOHILBERT
>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>> -I/usr/local/include -I/usr/local/include
>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o init.o
>>>>> init.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>>> -DPEANOHILBERT
>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>> -I/usr/local/include -I/usr/local/include
>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o restart.o
>>>>> restart.c restart.c: In function ‘restart’: restart.c:78:
>>>>> warning: ignoring return value of ‘system’, declared with
>>>>> attribute warn_unused_result mpicc    -O3 -Wall -DPERIODIC
>>>>> -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>> -I/usr/local/include -I/usr/local/include
>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o io.o io.c
>>>>> io.c: In function ‘write_file’:
>>>>> io.c:774: error: too few arguments to function ‘H5Gcreate2’
>>>>> io.c:781: error: too few arguments to function ‘H5Gcreate2’
>>>>> io.c:880: error: too few arguments to function ‘H5Dcreate2’
>>>>> io.c: In function ‘write_header_attributes_in_hdf5’:
>>>>> io.c:1005: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1012: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1019: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1027: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1033: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1039: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1045: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1051: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1057: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1063: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1069: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1075: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1081: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1087: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1093: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1099: error: too few arguments to function ‘H5Acreate2’
>>>>> io.c:1108: error: too few arguments to function ‘H5Acreate2’
>>>>> make: *** [io.o] Error 1
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> Can someone please help me?
>>>>> Thanks,
>>>>> Dimitry
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> -----------------------------------------------------------
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> If you wish to unsubscribe from this mailing, send mail to
>>>>> minimalist_at_MPA-Garching.MPG.de with a subject of:  unsubscribe
>>>>> gadget-list A web-archive of this mailing list is available here:
>>>>> http://www.mpa-garching.mpg.de/gadget/gadget-list
>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>
>>>
>>> --
>>> Dimitry Ayzenberg
>>> Carnegie Mellon University
>>> Physics - Class of 2012
>>> Cell:(732)-425-4534
>>> Email: dayzenbe_at_andrew.cmu.edu
>>>
>>>
>>>
>>>
>>>
>>>
>>> -----------------------------------------------------------
>>>
>>>
>>>
>>> If you wish to unsubscribe from this mailing, send mail to
>>> minimalist_at_MPA-Garching.MPG.de with a subject of:  unsubscribe
>>> gadget-list A web-archive of this mailing list is available here:
>>> http://www.mpa-garching.mpg.de/gadget/gadget-list
>>>
>>>
>>>
>>
>>
>
>
> --
> Dimitry Ayzenberg
> Carnegie Mellon University
> Physics - Class of 2012
> Cell:(732)-425-4534
> Email: dayzenbe_at_andrew.cmu.edu
>
>
>
>
>
> -----------------------------------------------------------
>
>
> If you wish to unsubscribe from this mailing, send mail to
> minimalist_at_MPA-Garching.MPG.de with a subject of: unsubscribe gadget-list
> A web-archive of this mailing list is available here:
> http://www.mpa-garching.mpg.de/gadget/gadget-list
>
>
> 


-- 
Dimitry Ayzenberg
Carnegie Mellon University
Physics - Class of 2012
Cell:(732)-425-4534
Email: dayzenbe_at_andrew.cmu.edu
Received on 2009-09-10 04:02:18

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