Re: Gadget2 _at_ HP-UX ia64?

From: Xianfeng Ye <xfye_at_mail.ustc.edu.cn>
Date: Wed, 16 Nov 2005 22:57:16 +0800

Hi All,

   I tested the Gadget2 at HP-UX ia64(superdome), but failed.
   Have somebody meets the same problem with that?
   The error log is as follow:

$ mpirun -np 8 ./Gadget2 ./parameterfiles/lcdm_gas.param

This is Gadget, version `2.0'.

Running on 8 processors.

found 5 times in output-list.

Allocated 100 MByte communication buffer per processor.

Communication buffer has room for 2383126 particles in gravity computation
Communication buffer has room for 819200 particles in density computation
Communication buffer has room for 655360 particles in hydro computation
Communication buffer has room for 609636 particles in domain decomposition


Hubble (internal units) = 0.1
G (internal units) = 43007.1
UnitMass_in_g = 1.989e+43
UnitTime_in_s = 3.08568e+16
UnitVelocity_in_cm_per_s = 100000
UnitDensity_in_cgs = 6.76991e-22
UnitEnergy_in_cgs = 1.989e+53

Task=0 FFT-Slabs=32
Task=1 FFT-Slabs=32
Task=2 FFT-Slabs=32
Task=3 FFT-Slabs=32
Task=4 FFT-Slabs=32
Task=5 FFT-Slabs=32
Task=6 FFT-Slabs=32
Task=7 FFT-Slabs=32

Allocated 0.999985 MByte for particle storage. 80

Allocated 0.524952 MByte for storage of SPH data. 84


reading file `/home/cfa/xfye/Gadget-2.0/ICs/lcdm_gas_bigendian.dat' on task=0
(contains 65536 particles.)
distributing this file to tasks 0-7
Type 0 (gas): 32768 (tot= 0000032768) masstab=4.23508
Type 1 (halo): 32768 (tot= 0000032768) masstab=27.528
Type 2 (disk): 0 (tot= 0000000000) masstab=0
Type 3 (bulge): 0 (tot= 0000000000) masstab=0
Type 4 (stars): 0 (tot= 0000000000) masstab=0
Type 5 (bndry): 0 (tot= 0000000000) masstab=0

reading done.
Total number of particles : 0000065536

allocated 0.0762939 Mbyte for ngb search.

Allocated 1.50295 MByte for BH-tree. 64

domain decomposition...
NTopleaves= 512
work-load balance=1.00854 memory-balance=1.00854
exchange of 0000058147 particles
domain decomposition done.
begin Peano-Hilbert order...
Peano-Hilbert done.
Begin Ngb-tree construction.
Ngb-Tree contruction finished
ngb iteration 1: need to repeat for 0000024703 particles.
ngb iteration 2: need to repeat for 0000001617 particles.
ngb iteration 3: need to repeat for 0000001603 particles.
ngb iteration 4: need to repeat for 0000000210 particles.

Setting next time for snapshot file to Time_next= 0.166667


Begin Step 0, Time: 0.0909091, Redshift: 10, Systemstep: 0, Dloga: 0
domain decomposition...
NTopleaves= 512
work-load balance=1.00854 memory-balance=1.00854
domain decomposition done.
begin Peano-Hilbert order...
Peano-Hilbert done.
Start force computation...
Starting periodic PM calculation.

Allocated 35.0502 MByte for FFT data.

MPI Application rank 4 killed before MPI_Finalize() with signal 11



Sincerely,
Xianfeng Ye
Nov, 16, 2005




>From: "Xianfeng Ye" <xfye_at_mail.ustc.edu.cn>
>Reply-To: "Xianfeng Ye" <xfye_at_mail.ustc.edu.cn>
>To: gadget-list_at_MPA-Garching.MPG.DE
>Subject: Re: [gadget-list] Gadget2 _at_ HP-UX ia64?
>Date:Fri, 21 Oct 2005 08:38:14 +0800
>
>Dear Volker,
>
> Thanks you very much!
> It works!
>
> Yes, you are right. That's not the gnu-Make, it's HP-UX's type.
>
> Cheers,
>
>
> Xianfeng, Ye
> Oct, 21, 2005
>
>

> >From: Volker Springel <volker_at_MPA-Garching.MPG.DE>
> >Reply-To: Gadget General Discussion <gadget-list_at_MPA-Garching.MPG.DE>
> >To: Gadget General Discussion <gadget-list_at_MPA-Garching.MPG.DE>
> >Subject: Re: [gadget-list] Gadget2 _at_ HP-UX ia64?
> >Date:Thu, 20 Oct 2005 17:47:06 +0200
> >
> >
> > Xianfeng Ye wrote:
> > > Dear all,
> > > I tried Gadget2 at our coma cluster(Beowulf system, Debian testing /
> > > i386)successfully with HDF5 support.
> > > Now, I want to run Gadget2 at HP-UX ia64(super dome), it returns error
> with
> > > some problems.
> > > 1)first, I install gsl:
> > >
> > > $ setenv CFLAGS "+O2 +DD64"
> > > $ setenv CPPFLAGS "+O2 +DD64"
> > > $ ./configure --prefix=/home/cfa/xfye/gsl
> > > --enable-shared --enable-static
> > >
> > > $ make; make install
> > > That's OK.
> > > 2)Then I install fftw:
> > > $ setenv CFLAGS "+O2 +DD64"
> > > $ setenv CPPFLAGS "+O2 +DD64"
> > > $ setenv FFLAGS "+O2 +DD64"
> > > $ ./configure --prefix=/home/cfa/xfye/fftw
> > > --enable-shared
> > > --enable-mpi
> > > --enable-threads
> > > $ make; make install.
> > > That's OK too.
> > > 3) to compile Gadget2:
> > > $ make -f lcdm_gas.Makefile
> > > Make: Must be a separator on rules line 12. Stop.
> >
> > presumably you don't use GNU-make, but the make the comes with HP's unix...
> >
> > > Then I compile it by hand:
> > > $ mpicc -DPERIODIC -DPEANOHILBERT -DWALLCLOCK
> > > -DPMGRID=256
> > > -DSYNCHRONIZATION +O2 +DD64 -lm
> > > -I/home/cfa/xfye/gsl/include
> > > -L/home/cfa/xfye/gsl/lib
> > > -I/home/cfa/xfye/fftw/include
> > > -L/home/cfa/xfye/fftw/lib
> > > *.c
> > > It returns errrors as follows:
> > >
> > > ld: Unsatisfied symbol "gsl_integration_qag" in file driftfac.o
> > > ld: Unsatisfied symbol "gsl_rng_state" in file restart.o
> > > ld: Unsatisfied symbol "gsl_rng_size" in file restart.o
> > > ld: Unsatisfied symbol "gsl_integration_workspace_free" in file
> driftfac.o
> > > ld: Unsatisfied symbol "rfftwnd_mpi_local_sizes" in file
> pm_nonperiodic.o
> > > ld: Unsatisfied symbol "gsl_rng_ranlxd1" in file begrun.o
> > > ld: Unsatisfied symbol "gsl_rng_alloc" in file begrun.o
> > > ld: Unsatisfied symbol "rfftw3d_mpi_create_plan" in file
> pm_nonperiodic.o
> > > ld: Unsatisfied symbol "rfftwnd_mpi" in file pm_nonperiodic.o
> > > ld: Unsatisfied symbol "gsl_integration_workspace_alloc" in file
> driftfac.o
> > > ld: Unsatisfied symbol "gsl_rng_uniform" in file system.o
> > > ld: Unsatisfied symbol "gsl_rng_set" in file begrun.o
> > >
> > > 12 errors.
> > >
> >
> > You haven't specified the GSL and FFTW libaries in the link command.
> >
> > Adding "-lgsl -lgslcblas -lrfftw_mpi -lfftw_mpi -lrfftw -lfftw" may help.
> >
> > -Volker
> >
> >
> >
> > > 4) Then I re-install gsl with additional option "--with-gnu-ld".
> > > 12 errors happen again.
> > >
> > > I don't know why. May you give me some advice or suggestion?
> > >
> > > Thanks in advance,
> > >
> > > Sincerely,
> > >
> > > Xianfeng Ye
> > > Oct, 15, 2005
> > >
> > > --
> > > =========================================
> > > | Xianfeng Ye
> > > | Center for Astrophysics
> > > | Univ. of Sci. & Tech. of China
> > > | Hefei, Anhui 230026
> > > -----------------------------------------
> > >
> > >
> > >
> > >
> > > -----------------------------------------------------------
> > >
> > > If you wish to unsubscribe from this mailing, send mail to
> > > minimalist_at_MPA-Garching.MPG.de with a subject of: unsubscribe gadget-list
> > > A web-archive of this mailing list is available here:
> > > http://www.mpa-garching.mpg.de/gadget/gadget-list
> >
> >
> >
> >
> > -----------------------------------------------------------
> >
> > If you wish to unsubscribe from this mailing, send mail to
> > minimalist_at_MPA-Garching.MPG.de with a subject of: unsubscribe gadget-list
> > A web-archive of this mailing list is available here:
> > http://www.mpa-garching.mpg.de/gadget/gadget-list
> >
>
>
>




------------------------------
--
___________________________________________
- - - - - - - - - - - - - - - - - - - - - -
| Xianfeng Ye                             |
| Center for Astrophysics                 |
| Univ. of Sci. & Tech. of China          |
| Hefei, Anhui 230026                     |
| P. R. China                             |
- - - - - - - - - - - - - - - - - - - - - -
Received on 2005-11-16 15:57:28

This archive was generated by hypermail 2.3.0 : 2022-09-01 14:03:41 CEST