Gadget2 on NCSA-Ember

From: Agarwal, Shankar <sagarwal_at_ku.edu>
Date: Mon, 24 Jan 2011 20:11:41 +0000

Hi,

I am trying to install Gadget2 on NCSA-Ember. I have edited the Makefile like this:

CC = gcc -lmpi
OPTIMIZE = -O3 -Wall
GSL_INCL = -I/usr/apps/math/gsl/gnu/1.14/include
GSL_LIBS = -L/usr/apps/math/gsl/gnu/1.14/lib
FFTW_INCL= -I/usr/apps/math/fftw/gnu/3.2.2/include
FFTW_LIBS = -L/usr/apps/math/fftw/gnu/3.2.2/lib
MPICHLIB =
HDF5INCL = -I/usr/apps/hdf/hdf5/v185-patch1/include
HDF5LIB = -lhdf5 -lz -L/usr/apps/hdf/szip/lib -lsz

The "make" command crashes at io.c. Please let me know if you can help me debug this.

-Shankar
KU Cosmology Group


gcc -lmpi -O3 -Wall -DPERIODIC -DUNEQUALSOFTENINGS -DPEANOHILBERT -DWALLCLOCK -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5 -I/usr/apps/math/gsl/gnu/1.14/include -I/usr/apps/math/fftw/gnu/3.2.2/include -I/usr/apps/hdf/hdf5/v185-patch1/include -c -o main.o main.c
gcc -lmpi -O3 -Wall -DPERIODIC -DUNEQUALSOFTENINGS -DPEANOHILBERT -DWALLCLOCK -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5 -I/usr/apps/math/gsl/gnu/1.14/include -I/usr/apps/math/fftw/gnu/3.2.2/include -I/usr/apps/hdf/hdf5/v185-patch1/include -c -o run.o run.c
gcc -lmpi -O3 -Wall -DPERIODIC -DUNEQUALSOFTENINGS -DPEANOHILBERT -DWALLCLOCK -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5 -I/usr/apps/math/gsl/gnu/1.14/include -I/usr/apps/math/fftw/gnu/3.2.2/include -I/usr/apps/hdf/hdf5/v185-patch1/include -c -o predict.o predict.c
gcc -lmpi -O3 -Wall -DPERIODIC -DUNEQUALSOFTENINGS -DPEANOHILBERT -DWALLCLOCK -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5 -I/usr/apps/math/gsl/gnu/1.14/include -I/usr/apps/math/fftw/gnu/3.2.2/include -I/usr/apps/hdf/hdf5/v185-patch1/include -c -o begrun.o begrun.c
gcc -lmpi -O3 -Wall -DPERIODIC -DUNEQUALSOFTENINGS -DPEANOHILBERT -DWALLCLOCK -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5 -I/usr/apps/math/gsl/gnu/1.14/include -I/usr/apps/math/fftw/gnu/3.2.2/include -I/usr/apps/hdf/hdf5/v185-patch1/include -c -o endrun.o endrun.c
gcc -lmpi -O3 -Wall -DPERIODIC -DUNEQUALSOFTENINGS -DPEANOHILBERT -DWALLCLOCK -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5 -I/usr/apps/math/gsl/gnu/1.14/include -I/usr/apps/math/fftw/gnu/3.2.2/include -I/usr/apps/hdf/hdf5/v185-patch1/include -c -o global.o global.c
gcc -lmpi -O3 -Wall -DPERIODIC -DUNEQUALSOFTENINGS -DPEANOHILBERT -DWALLCLOCK -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5 -I/usr/apps/math/gsl/gnu/1.14/include -I/usr/apps/math/fftw/gnu/3.2.2/include -I/usr/apps/hdf/hdf5/v185-patch1/include -c -o timestep.o timestep.c
gcc -lmpi -O3 -Wall -DPERIODIC -DUNEQUALSOFTENINGS -DPEANOHILBERT -DWALLCLOCK -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5 -I/usr/apps/math/gsl/gnu/1.14/include -I/usr/apps/math/fftw/gnu/3.2.2/include -I/usr/apps/hdf/hdf5/v185-patch1/include -c -o init.o init.c
gcc -lmpi -O3 -Wall -DPERIODIC -DUNEQUALSOFTENINGS -DPEANOHILBERT -DWALLCLOCK -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5 -I/usr/apps/math/gsl/gnu/1.14/include -I/usr/apps/math/fftw/gnu/3.2.2/include -I/usr/apps/hdf/hdf5/v185-patch1/include -c -o restart.o restart.c
gcc -lmpi -O3 -Wall -DPERIODIC -DUNEQUALSOFTENINGS -DPEANOHILBERT -DWALLCLOCK -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5 -I/usr/apps/math/gsl/gnu/1.14/include -I/usr/apps/math/fftw/gnu/3.2.2/include -I/usr/apps/hdf/hdf5/v185-patch1/include -c -o io.o io.c
io.c: In function ‘write_file’:
io.c:774: error: too few arguments to function ‘H5Gcreate2’
io.c:781: error: too few arguments to function ‘H5Gcreate2’
io.c:880: error: too few arguments to function ‘H5Dcreate2’
io.c: In function ‘write_header_attributes_in_hdf5’:
io.c:1005: error: too few arguments to function ‘H5Acreate2’
io.c:1012: error: too few arguments to function ‘H5Acreate2’
io.c:1019: error: too few arguments to function ‘H5Acreate2’
io.c:1027: error: too few arguments to function ‘H5Acreate2’
io.c:1033: error: too few arguments to function ‘H5Acreate2’
io.c:1039: error: too few arguments to function ‘H5Acreate2’
io.c:1045: error: too few arguments to function ‘H5Acreate2’
io.c:1051: error: too few arguments to function ‘H5Acreate2’
io.c:1057: error: too few arguments to function ‘H5Acreate2’
io.c:1063: error: too few arguments to function ‘H5Acreate2’
io.c:1069: error: too few arguments to function ‘H5Acreate2’
io.c:1075: error: too few arguments to function ‘H5Acreate2’
io.c:1081: error: too few arguments to function ‘H5Acreate2’
io.c:1087: error: too few arguments to function ‘H5Acreate2’
io.c:1093: error: too few arguments to function ‘H5Acreate2’
io.c:1099: error: too few arguments to function ‘H5Acreate2’
io.c:1108: error: too few arguments to function ‘H5Acreate2’
make: *** [io.o] Error 1
Received on 2011-01-24 21:11:46