Re: Error when doing make

From: Dimitry Ayzenberg <dayzenbe_at_andrew.cmu.edu>
Date: Wed, 9 Sep 2009 22:07:06 -0400

No that didn't fix it. Same error. Seems like it can't find srfftw_mpi.h.
What would that not being there be caused by? The fftw install or the mpi
install?

Dimitry


On Wed, September 9, 2009 21:40, Dimitry Ayzenberg wrote:
>

> I figured out the problem, I think. I used version 3 of fftw which
> apparently doesn't work. Retrying with version 2 and using the extra
> configuration options that are shown in the guide.
>
> Dimitry
>
>
>
> On Wed, September 9, 2009 21:35, Dimitry Ayzenberg wrote:
>
>>
>
>> No I'm pretty sure those are properly set, especially since make got
>> past the part where it checks if all the headers are available.
>>
>> Dimitry
>>
>>
>>
>>
>> On Wed, September 9, 2009 20:58, SangHoon Oh wrote:
>>
>>
>>> Hi,
>>>
>>>
>>>
>>>
>>> Perhaps you didn't include the FFTW headers properly.
>>> Please check the CFLAGS whether -I/PATH/TO/FFTW/HEADERS
>>> is set to correct the path.
>>>
>>> Good luck,
>>>
>>>
>>>
>>>
>>> SangHoon
>>>
>>>
>>>
>>>
>>>
>>> On Thu, Sep 10, 2009 at 8:09 AM, Dimitry
>>> Ayzenberg<dayzenbe_at_andrew.cmu.edu> wrote:
>>>
>>>
>>>
>>>>
>>>> Okay so that worked after I switched to version 1.6.9 and that
>>>> error didn't come up again. But now this comes up: (sorry that I
>>>> pasted all of it but I figure that would help whoever helps me
>>>> figure it out easier)
>>>>
>>>>
>>>>
>>>> dimitry_at_Phoenix:~/Desktop/Gadget-2.0.4/Gadget2$ sudo make
>>>> mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o main.o
>>>> main.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o run.o run.c
>>>> run.c: In function €˜run€™:
>>>> run.c:102: warning: ignoring return value of €˜system€™, declared
>>>> with attribute warn_unused_result mpicc    -O3 -Wall -DPERIODIC
>>>>  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o predict.o
>>>> predict.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o begrun.o
>>>> begrun.c begrun.c: In function €˜read_parameter_file€™:
>>>> begrun.c:602:
>>>> warning: ignoring return value of €˜fgets€™, declared
>>>> with attribute warn_unused_result begrun.c:653: warning: ignoring
>>>> return value of €˜system€™, declared with attribute
>>>> warn_unused_result mpicc    -O3 -Wall -DPERIODIC
>>>>  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o endrun.o
>>>> endrun.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o global.o
>>>> global.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o timestep.o
>>>> timestep.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o init.o
>>>> init.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o restart.o
>>>> restart.c restart.c: In function €˜restart€™: restart.c:78:
>>>> warning:
>>>> ignoring return value of €˜system€™, declared with attribute
>>>> warn_unused_result mpicc    -O3 -Wall -DPERIODIC
>>>>  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o io.o io.c
>>>> io.c: In function €˜write_file€™:
>>>> io.c:687: warning: €˜rank€™ may be used uninitialized in this
>>>> function mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o accel.o
>>>> accel.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o read_ic.o
>>>> read_ic.c read_ic.c: In function €˜find_files€™: read_ic.c:649:
>>>> warning: ignoring return value of €˜fread€™, declared
>>>> with attribute warn_unused_result read_ic.c:650: warning: ignoring
>>>> return value of €˜fread€™, declared with attribute
>>>> warn_unused_result read_ic.c:651: warning: ignoring return value of
>>>> €˜fread€™, declared with attribute warn_unused_result
>>>> read_ic.c:652:
>>>> warning: ignoring return
>>>> value of €˜fread€™, declared with attribute warn_unused_result
>>>> read_ic.c:655: warning: ignoring return value of €˜fread€™,
>>>> declared with attribute warn_unused_result read_ic.c:656: warning:
>>>> ignoring return value of €˜fread€™, declared with attribute
>>>> warn_unused_result read_ic.c:657: warning: ignoring return value of
>>>> €˜fread€™, declared with attribute warn_unused_result
>>>> read_ic.c:681:
>>>> warning: ignoring return
>>>> value of €˜fread€™, declared with attribute warn_unused_result
>>>> read_ic.c:682: warning: ignoring return value of €˜fread€™,
>>>> declared with attribute warn_unused_result read_ic.c:683: warning:
>>>> ignoring return value of €˜fread€™, declared with attribute
>>>> warn_unused_result read_ic.c:684: warning: ignoring return value of
>>>> €˜fread€™, declared with attribute warn_unused_result
>>>> read_ic.c:687:
>>>> warning: ignoring return
>>>> value of €˜fread€™, declared with attribute warn_unused_result
>>>> read_ic.c:688: warning: ignoring return value of €˜fread€™,
>>>> declared with attribute warn_unused_result read_ic.c:689: warning:
>>>> ignoring return value of €˜fread€™, declared with attribute
>>>> warn_unused_result read_ic.c: In function €˜read_file€™:
>>>> read_ic.c:260: warning: €˜hdf5_file€™ may be used uninitialized
>>>> in this function read_ic.c:261: warning: €˜hdf5_datatype€™ may be
>>>> used uninitialized in this function mpicc    -O3 -Wall -DPERIODIC
>>>>  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o ngb.o ngb.c
>>>> mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o system.o
>>>> system.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o allocate.o
>>>> allocate.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o density.o
>>>> density.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o gravtree.o
>>>> gravtree.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o hydra.o
>>>> hydra.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o driftfac.o
>>>> driftfac.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o domain.o
>>>> domain.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o allvars.o
>>>> allvars.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o potential.o
>>>> potential.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o forcetree.o
>>>> forcetree.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o peano.o
>>>> peano.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>> -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o
>>>> gravtree_forcetest.o gravtree_forcetest.c mpicc    -O3 -Wall
>>>> -DPERIODIC
>>>>  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>> -I/usr/local/include -I/usr/local/include
>>>> -I/home/dimitry/Desktop/hdf5-1.6.9/hdf5/include   -c -o
>>>> pm_periodic.o pm_periodic.c pm_periodic.c:21:28: error:
>>>> srfftw_mpi.h: No such file
>>>> or directory pm_periodic.c:34: error: expected €˜=€™, €˜,€™,
>>>> €˜;€™, €˜asm€™ or €˜__attribute__€™ before
>>>> €˜fft_forward_plan€™ pm_periodic.c:45: error: expected €˜=€™,
>>>> €˜,€™, €˜;€™, €˜asm€™ or €˜__attribute__€™ before €˜*€™
>>>> token pm_periodic.c:46: error: expected €˜=€™, €˜,€™, €˜;€™,
>>>> €˜asm€™ or €˜__attribute__€™ before €˜*€™ token
>>>> pm_periodic.c:
>>>> In function €˜pm_init_periodic€™:
>>>> pm_periodic.c:65: error: €˜fft_forward_plan€™ undeclared (first
>>>> use in this function) pm_periodic.c:65: error: (Each undeclared
>>>> identifier is reported only once pm_periodic.c:65: error: for each
>>>> function it appears in.) pm_periodic.c:65: warning: implicit
>>>> declaration of function €˜rfftw3d_mpi_create_plan€™
>>>> pm_periodic.c:66: error:
>>>> €˜FFTW_REAL_TO_COMPLEX€™ undeclared (first use in this function)
>>>> pm_periodic.c:66: error: €˜FFTW_ESTIMATE€™ undeclared (first use
>>>> in this function) pm_periodic.c:66: error: €˜FFTW_IN_PLACE€™
>>>> undeclared (first use in this function) pm_periodic.c:67: error:
>>>> €˜fft_inverse_plan€™ undeclared (first use in this
>>>> function) pm_periodic.c:68: error: €˜FFTW_COMPLEX_TO_REAL€™
>>>> undeclared (first use in this function) pm_periodic.c:72: warning:
>>>> implicit declaration of function €˜rfftwnd_mpi_local_sizes€™
>>>> pm_periodic.c: In function
>>>> €˜pm_init_periodic_allocate€™:
>>>> pm_periodic.c:124: error: €˜rhogrid€™ undeclared (first use in
>>>> this function) pm_periodic.c:124: error: €˜fftw_real€™ undeclared
>>>> (first
>>>> use in this function) pm_periodic.c:124: error: expected expression
>>>> before €˜)€™ token pm_periodic.c:132: error: €˜forcegrid€™
>>>> undeclared (first use in this function) pm_periodic.c:132: error:
>>>> expected expression before €˜)€™ token pm_periodic.c:139: error:
>>>> €˜workspace€™ undeclared (first use in this function)
>>>> pm_periodic.c:139: error: expected expression before €˜)€™ token
>>>> pm_periodic.c:153: error: €˜fft_of_rhogrid€™ undeclared (first use
>>>> in this function) pm_periodic.c:153: error: €˜fftw_complex€™
>>>> undeclared (first use in this function) pm_periodic.c:153: error:
>>>> expected expression before €˜)€™ token pm_periodic.c: In function
>>>> €˜pm_init_periodic_free€™:
>>>> pm_periodic.c:163: error: €˜workspace€™ undeclared (first use in
>>>> this function) pm_periodic.c:164: error: €˜forcegrid€™ undeclared
>>>> (first
>>>> use in this function) pm_periodic.c:165: error: €˜rhogrid€™
>>>> undeclared (first use in this function) pm_periodic.c: In function
>>>> €˜pmforce_periodic€™:
>>>> pm_periodic.c:246: error: €˜workspace€™ undeclared (first use in
>>>> this function) pm_periodic.c:284: error: €˜rhogrid€™ undeclared
>>>> (first use
>>>> in this function) pm_periodic.c:330: error: €˜fftw_real€™
>>>> undeclared (first use in this function)
>>>> pm_periodic.c:331: error: €˜forcegrid€™ undeclared (first use in
>>>> this function) pm_periodic.c:375: warning: implicit declaration of
>>>> function €˜rfftwnd_mpi€™ pm_periodic.c:375: error:
>>>> €˜fft_forward_plan€™ undeclared (first use in this function)
>>>> pm_periodic.c:375: error:
>>>> €˜FFTW_TRANSPOSED_ORDER€™ undeclared (first use in this function)
>>>> pm_periodic.c:426: error: €˜fft_of_rhogrid€™ undeclared (first
>>>> use in this function) pm_periodic.c:436: error:
>>>> €˜fft_inverse_plan€™ undeclared (first use in this function)
>>>> pm_periodic.c: In function
>>>> €˜pmpotential_periodic€™:
>>>> pm_periodic.c:755: error: €˜workspace€™ undeclared (first use in
>>>> this function) pm_periodic.c:793: error: €˜rhogrid€™ undeclared
>>>> (first use
>>>> in this function) pm_periodic.c:839: error: €˜fftw_real€™
>>>> undeclared (first use in this function)
>>>> pm_periodic.c:840: error: €˜forcegrid€™ undeclared (first use in
>>>> this function) pm_periodic.c:886: error: €˜fft_forward_plan€™
>>>> undeclared (first use in this function) pm_periodic.c:886: error:
>>>> €˜FFTW_TRANSPOSED_ORDER€™ undeclared (first use in this function)
>>>> pm_periodic.c:934: error:
>>>> €˜fft_of_rhogrid€™ undeclared (first use in this function)
>>>> pm_periodic.c:944: error: €˜fft_inverse_plan€™ undeclared (first
>>>> use in this function) make: *** [pm_periodic.o] Error 1
>>>>
>>>>
>>>>
>>>> Thanks,
>>>> Dimitry
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> On Wed, September 9, 2009 18:00, Jay Billings wrote:
>>>>
>>>>
>>>>
>>>>> Ah, this error is much more subtle than the others. :) I believe
>>>>> this one is caused by using the wrong version of the HDF5 library.
>>>>> You are
>>>>> probably  using version 1.8.2 and need something like version
>>>>> 1.6.2.
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> There were some updates to the HDF5 API when they did version
>>>>> 1.8.
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> Jay
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On Wed, Sep 9, 2009 at 5:20 PM, Dimitry Ayzenberg
>>>>> <dayzenbe_at_andrew.cmu.edu>wrote:
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>
>>>>>> So I think I have all the libraries and whatever else I need
>>>>>> properly installed and linked. But when I run make I get an odd
>>>>>> error that I have  no idea how to fix. This is the full
>>>>>> display when I do "make":
>>>>>>
>>>>>> dimitry_at_Phoenix:~/Desktop/Gadget-2.0.4/Gadget2$ sudo make
>>>>>> mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>>>> -DPEANOHILBERT
>>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>>> -I/usr/local/include -I/usr/local/include
>>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o main.o
>>>>>> main.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>>>> -DPEANOHILBERT
>>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>>> -I/usr/local/include -I/usr/local/include
>>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o run.o
>>>>>> run.c run.c: In function €˜run€™: run.c:102: warning: ignoring
>>>>>> return value of €˜system€™, declared with attribute
>>>>>> warn_unused_result mpicc    -O3 -Wall -DPERIODIC
>>>>>> -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>>> -I/usr/local/include -I/usr/local/include
>>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o
>>>>>> predict.o predict.c mpicc    -O3 -Wall -DPERIODIC
>>>>>>  -DUNEQUALSOFTENINGS
>>>>>> -DPEANOHILBERT
>>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>>> -I/usr/local/include -I/usr/local/include
>>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o
>>>>>> begrun.o begrun.c begrun.c: In function
>>>>>> €˜read_parameter_file€™:
>>>>>> begrun.c:602: warning: ignoring return value of €˜fgets€™,
>>>>>> declared with attribute warn_unused_result begrun.c:653:
>>>>>> warning:
>>>>>> ignoring return value of €˜system€™, declared with attribute
>>>>>> warn_unused_result mpicc    -O3 -Wall -DPERIODIC
>>>>>>  -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>>> -I/usr/local/include -I/usr/local/include
>>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o
>>>>>> endrun.o endrun.c mpicc    -O3 -Wall -DPERIODIC
>>>>>>  -DUNEQUALSOFTENINGS
>>>>>> -DPEANOHILBERT
>>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>>> -I/usr/local/include -I/usr/local/include
>>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o
>>>>>> global.o global.c mpicc    -O3 -Wall -DPERIODIC
>>>>>>  -DUNEQUALSOFTENINGS
>>>>>> -DPEANOHILBERT
>>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>>> -I/usr/local/include -I/usr/local/include
>>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o
>>>>>> timestep.o timestep.c mpicc    -O3 -Wall -DPERIODIC
>>>>>>  -DUNEQUALSOFTENINGS
>>>>>> -DPEANOHILBERT
>>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>>> -I/usr/local/include -I/usr/local/include
>>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o init.o
>>>>>> init.c mpicc    -O3 -Wall -DPERIODIC  -DUNEQUALSOFTENINGS
>>>>>> -DPEANOHILBERT
>>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>>> -I/usr/local/include -I/usr/local/include
>>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o
>>>>>> restart.o restart.c restart.c: In function €˜restart€™:
>>>>>> restart.c:78:
>>>>>> warning: ignoring return value of €˜system€™, declared with
>>>>>> attribute warn_unused_result mpicc    -O3 -Wall -DPERIODIC
>>>>>> -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>>>>> -DWALLCLOCK    -DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>>> -I/usr/local/include -I/usr/local/include
>>>>>> -I/home/dimitry/Desktop/hdf5-1.8.3/hdf5/include   -c -o io.o
>>>>>> io.c io.c: In function €˜write_file€™:
>>>>>> io.c:774: error: too few arguments to function €˜H5Gcreate2€™
>>>>>> io.c:781: error: too few arguments to function €˜H5Gcreate2€™
>>>>>> io.c:880: error: too few arguments to function €˜H5Dcreate2€™
>>>>>> io.c: In function €˜write_header_attributes_in_hdf5€™:
>>>>>> io.c:1005: error: too few arguments to function €˜H5Acreate2€™
>>>>>> io.c:1012: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1019: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1027: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1033: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1039: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1045: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1051: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1057: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1063: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1069: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1075: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1081: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1087: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1093: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1099: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ io.c:1108: error: too few arguments to function
>>>>>> €˜H5Acreate2€™ make: *** [io.o] Error 1
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> Can someone please help me?
>>>>>> Thanks,
>>>>>> Dimitry
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> -----------------------------------------------------------
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> If you wish to unsubscribe from this mailing, send mail to
>>>>>> minimalist_at_MPA-Garching.MPG.de with a subject of:  unsubscribe
>>>>>> gadget-list A web-archive of this mailing list is available
>>>>>> here:
>>>>>> http://www.mpa-garching.mpg.de/gadget/gadget-list
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Dimitry Ayzenberg
>>>> Carnegie Mellon University
>>>> Physics - Class of 2012
>>>> Cell:(732)-425-4534
>>>> Email: dayzenbe_at_andrew.cmu.edu
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> -----------------------------------------------------------
>>>>
>>>>
>>>>
>>>>
>>>> If you wish to unsubscribe from this mailing, send mail to
>>>> minimalist_at_MPA-Garching.MPG.de with a subject of:  unsubscribe
>>>> gadget-list A web-archive of this mailing list is available here:
>>>> http://www.mpa-garching.mpg.de/gadget/gadget-list
>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>
>>
>> --
>> Dimitry Ayzenberg
>> Carnegie Mellon University
>> Physics - Class of 2012
>> Cell:(732)-425-4534
>> Email: dayzenbe_at_andrew.cmu.edu
>>
>>
>>
>>
>>
>>
>> -----------------------------------------------------------
>>
>>
>>
>> If you wish to unsubscribe from this mailing, send mail to
>> minimalist_at_MPA-Garching.MPG.de with a subject of: unsubscribe
>> gadget-list A web-archive of this mailing list is available here:
>> http://www.mpa-garching.mpg.de/gadget/gadget-list
>>
>>
>>
>>
>
>
> --
> Dimitry Ayzenberg
> Carnegie Mellon University
> Physics - Class of 2012
> Cell:(732)-425-4534
> Email: dayzenbe_at_andrew.cmu.edu
>
>
>
>
>
> -----------------------------------------------------------
>
>
> If you wish to unsubscribe from this mailing, send mail to
> minimalist_at_MPA-Garching.MPG.de with a subject of: unsubscribe gadget-list
> A web-archive of this mailing list is available here:
> http://www.mpa-garching.mpg.de/gadget/gadget-list
>
>
>


-- 
Dimitry Ayzenberg
Carnegie Mellon University
Physics - Class of 2012
Cell:(732)-425-4534
Email: dayzenbe_at_andrew.cmu.edu
Received on 2009-09-10 04:07:09

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