Re: Running GADGET 2 on Vista

From: Arman Khalatyan <arm2arm_at_googlemail.com>
Date: Wed, 12 Aug 2009 16:48:32 +0200

Mpich from Windows will not help you.
Using cygwin setup install/add mpich library, and it will bring mpicc.
cheers a.


On Wed, Aug 12, 2009 at 3:22 PM, Sander Valcke <Sander.Valcke_at_ugent.be>wrote:

>
> Find the SYSTYPE part of the makefile, add your own type e.g.:
>
> SYSTYPE="Dimitri"
>
> ifeq ($(SYSTYPE),"Dimitri")
> CC = mpicc OPTIMIZE = -O3 -Wall
> #OPTIMIZE = -g -Wall
> GSL_INCL = -I/usr/include/gsl
> GSL_LIBS = -L/usr/lib -Wl,"-R/usr/lib"
> FFTW_INCL= -I/usr/include
> FFTW_LIBS= -L/usr/lib
> MPICHLIB = HDF5INCL = HDF5LIB = endif
>
> try to compile, if packages or include files are missing some of the above
> flags need to be adjusted (depending on where gsl and fftw include files and
> libraries were installed). Personally I don't have to specify anything for
> mpi, my lam mpicc seems to know where to find its stuff.
>
> Sander
>
>
> Dimitry Ayzenberg wrote:
>
>> Okay so now I need the change my makefile, but I'm not sure where to
>> change it for mpi. Or for that matter in what format it should be in.
>>
>> -Dimitry
>>
>>
>> On Tue, August 11, 2009 14:01, Jay Billings wrote:
>>
>>
>>
>>> Configuration with Cygwin can take a really long time, just hang in
>>> there.
>>>
>>> After that, you should be able to link to it. You will need to edit
>>> your Makefile and change the mpi include directory before you recompile.
>>>
>>> Jay
>>>
>>>
>>> On 8/11/09, Dimitry Ayzenberg <dayzenbe_at_andrew.cmu.edu> wrote:
>>>
>>>
>>>
>>>> I have mpich2 installed. Found a version for windows that just installs
>>>> like any other windows program. Not sure how to link it though.
>>>>
>>>> And I'm trying LAM but the configuration for it is taking really long.
>>>> Over an hour now.
>>>>
>>>>
>>>> Dimitry
>>>>
>>>>
>>>>
>>>> On Tue, August 11, 2009 13:29, Jay Billings wrote:
>>>>
>>>>
>>>>
>>>>> Looks like you didn't compile and link the MPI library.
>>>>>
>>>>>
>>>>>
>>>>> Jay
>>>>>
>>>>>
>>>>>
>>>>> On Tue, Aug 11, 2009 at 10:17 AM, Dimitry Ayzenberg
>>>>> <dayzenbe_at_andrew.cmu.edu
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>> wrote:
>>>>>>
>>>>>>
>>>>>> Okay so I added fftw and gsl but I still get errors. The
>>>>>> first
>>>>>> error I get is that mpicc is an unknown command. So I went into the
>>>>>> makefile and changed the C compiler listed to gcc since that is what
>>>>>> cygwin has. After
>>>>>> that the mpicc error goes away but I get other ones that are
>>>>>> confusing to me. This is what the output is when I do the make
>>>>>> command:
>>>>>>
>>>>>>
>>>>>> gcc -03 -Wall -DPERIODIC -DUNEQUALSOFTENINGS -DPEANOHILBERT
>>>>>> -DWALLCLOCK
>>>>>> DPMGRID=128 -DSYNCHRONIZATION -DHAVE_HDF5
>>>>>> -I/usr/commmon/pdsoft/include
>>>>>> -o main.o main.c
>>>>>> main.c:5:17: mpi.h: No such file or directory
>>>>>> In file included from main.c:8:
>>>>>> proto.h:10:18: hdf5.h: No such file or directory
>>>>>> In file included from main.c:8:
>>>>>> proto.h:193: error: parse error before "handle"
>>>>>> main.c: In function 'main':
>>>>>> main.c:26: warning: implicit declaration of function 'MPI_Init'
>>>>>> main.c:27: warning: implicit declaration of function 'MPI_Comm_rank'
>>>>>> main.c:27: error: 'MPI_COMM_WORLD' undeclared (first use in this
>>>>>> function) main.c:27: error: (Each undeclared identifier is reported
>>>>>> only once main.c:27: error: for each function it appears in.)
>>>>>> main.c:28: warning: implicit declaration of function
>>>>>> 'MPI_Comm_size'
>>>>>> main.c:73: warning: implicit declaration of function 'MPI_Finalize'
>>>>>> make: *** [main.o] Error 1
>>>>>>
>>>>>>
>>>>>>
>>>>>> And I don't really understand what does errors actually mean or how
>>>>>> I
>>>>>> can fix them. I'm used to c++ and java programming, where the errors
>>>>>> are more straightforward. Thanks for the help.
>>>>>>
>>>>>>
>>>>>> On Tue, August 11, 2009 06:11, Arman Khalatyan wrote:
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>> coming up with errors that I don't understand. Are there
>>>>>>>> specific libraries I need to add to cygwin or is there a certain
>>>>>>>> way I would need
>>>>>>>>
>>>>>>>>
>>>>>>> More detail would help.
>>>>>>> What kind of errors?
>>>>>>> You should install fftw(if you need cosmological runs) and gls on
>>>>>>> cygwin. a.
>>>>>>>
>>>>>>> ------------------------------------------
>>>>>>> Dr Arman Khalatyan,
>>>>>>> Observatoire Astronomique de Marseille-Provence
>>>>>>> Laboratoire d'Astrophysique de Marseille
>>>>>>> -----------------------------------------
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>> --
>>>>>> Dimitry Ayzenberg
>>>>>> Carnegie Mellon University
>>>>>> Physics - Class of 2012
>>>>>> Cell:(732)-425-4534
>>>>>> Email: dayzenbe_at_andrew.cmu.edu
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> -----------------------------------------------------------
>>>>>>
>>>>>>
>>>>>>
>>>>>> If you wish to unsubscribe from this mailing, send mail to
>>>>>> minimalist_at_MPA-Garching.MPG.de with a subject of: unsubscribe
>>>>>> gadget-list A web-archive of this mailing list is available here:
>>>>>> http://www.mpa-garching.mpg.de/gadget/gadget-list
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>> --
>>>> Dimitry Ayzenberg
>>>> Carnegie Mellon University
>>>> Physics - Class of 2012
>>>> Cell:(732)-425-4534
>>>> Email: dayzenbe_at_andrew.cmu.edu
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> -----------------------------------------------------------
>>>>
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>>>>
>>>>
>>>>
>>>
>>>
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>>>
>>>
>>>
>>
>>
>>
>>
>
> --
> --------------------------------------------------
> | Sander Valcke |
> | Sterrenkundig Observatorium, Universiteit Gent |
> | Krijgslaan 281 S9, B-9000 Gent, Belgium |
> | phone +32-9-264-4796 | fax +32-9-264-4989 |
> | https://sourceforge.net/projects/hyplot/ |
> --------------------------------------------------
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-- 
------------------------------------------
Dr Arman Khalatyan,
Observatoire Astronomique de Marseille-Provence
Laboratoire d'Astrophysique de Marseille
-----------------------------------------
Received on 2009-08-12 16:48:33

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